Nexus’s Internal Modules#

Debug Module
- ci
- interact
Developer Module
- deprecation_error
- DevBaseNexus
- to_obj
- DevBase
Execute Module
- execute
File IO Module
- TextFile
- StandardFile
- XsfFile
- PoscarFile
- ChgcarFile
- read_poscar_chgcar
Nexus Generic Module
- NexusError
- FileFormatError
- NotAnElementError
- NexusDevWarning
- NexusUserWarning
- nocopy
- nxs_print
- message
- warn
- nxs_deprecate
- error
Grid Functions Module
HDF Reader Module
- HDFglobals
- HDFgroup
- HDFreader
- read_hdf
Memory Module
- get_children
- all_children
- memory
- resident
- stacksize
NexusBase Module
- ShowStatusMode
- SimStage
- NexusConfig
- NexusUnpickler
- write_splash
- NexusCore
Numerics Module
- least_squares
- absmin
- madmin
- curve_fit
- morse
- morse_re
- morse_a
- morse_De
- morse_Einf
- morse_width
- morse_depth
- morse_Ee
- morse_k
- morse_params
- morse_reduced_mass
- morse_freq
- morse_w
- morse_wX
- morse_E0
- morse_En
- morse_zero_point
- morse_harmfreq
- morse_harmonic_potential
- morse_spect_fit
- morse_rDw_fit
- morse_fit
- morse_fit_fine
- murnaghan
- birch
- vinet
- murnaghan_pressure
- birch_pressure
- vinet_pressure
- eos_Einf
- eos_V
- eos_B
- eos_Bp
- eos_eval
- eos_param
- eos_fit
- jackknife
- numerics_jackknife
- jackknife_aux
- check_jackknife_inputs
- ndgrid
- simstats
- simplestats
- equilibration_length
- ttest
- surface_normals
- simple_surface
- func_fit
- distance_table
- nearest_neighbors
- voronoi_neighbors
- convex_hull
- layers_1d
- layer_means_1d
- index_by_layer_1d
Statistics Module
- theil_sen
- theil_sen_stoch
- theil_sen_stoch_reblock
- reblocked_autocorr_time
- acf_autocorr_time
- geyer_ims_autocorr_time
- autocorr_time
- series_stats
- time_series_intervals
- interval_distribution
- plot_interval_dist
- interval_dist_peak
- rolling_interval_dist_peak
- line_crossing_distribution
- lcd_peak
- lcd_smooth
- pair_expand_ts_intervals
- lcd_trim_l
- lcd_trim_r
- lcd_trim_lr
- lcd_trim_lrm
- mean_smooth
- median_smooth
- poly_smooth
- poly_smooth_
- local_median_smooth
- TimeSeriesAnalyzer
Numpy Extensions Module
- reshape_inplace
Observables Module
- get_path
- VLog
- set_verbosity
- Missing
- AttributeProperties
- DefinedAttributeBase
- Observable
- ObservableWithComponents
- read_eshdf_nofk_data
- MomentumDistribution
- MomentumDistributionDFT
- MomentumDistributionQMC
- Density
- ChargeDensity
- EnergyDensity
- StatFile
Periodic Table Module
- ElementData
- Elements
Project Manager Module
- color_status_result
- trivial
- ProjectManager
- DynamicWorkflowManager
- workflow_manager
Simulation Module
- SimulationInput
- SimulationAnalyzer
- SimulationEmulator
- SimulationImage
- Simulation
- NullSimulationInput
- NullSimulationAnalyzer
- GenericSimulationInput
- GenericSimulation
- SimulationInputTemplateDev
- SimulationInputMultiTemplateDev
- SimulationInputTemplate
- SimulationInputMultiTemplate
- input_template_dev
- multi_input_template_dev
- input_template
- multi_input_template
- generate_template_input
- generate_multi_template_input
- generate_simulation
- graph_sims
- DynamicProcess
- sim_err_handler
Testing Module
- float_diff
- value_diff
- dict_serialize
- object_diff
- read_text_value
- read_text_tokens
- text_diff
- print_diff
- check_value_eq
- check_object_eq
- value_neq
- value_eq
- object_neq
- object_eq
- text_neq
- text_eq
- failed
- FailedTest
- clear_all_sims
- check_final_state
- execute
Unit Converters Module
- Unit
- UnitConverter
- convert
Utilities Module
- to_str
- valid_variable_name
- is_valid_path
- is_valid_filename
- is_relative_path
- path_string
XML Reader Module
- parse_string
- find_pair
- remove_pair_sections
- remove_empty_lines
- XMLelement
- XMLreader
- readxml